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VBRC Gene Detail
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[VBRC|VP0031458] CHIKV-37997-E1 location: (9993..11312) VOC[890]: E1 VOC function: Envelope glycoprotein E1 [VBRC|VP0031457] CHIKV-37997-6k location: (9810..9992) VOC[889]: 6k VOC function: Structural protein 6K [VBRC|VP0031456] CHIKV-37997-E2 location: (8544..9809) VOC[888]: E2 VOC function: Envelope glycoprotein E2 [VBRC|VP0031455] CHIKV-37997-E3 location: (8349..8543) VOC[887]: E3 VOC function: Envelope glycoprotein E3 [VBRC|VP0031454] CHIKV-37997-C location: (7569..8348) VOC[885]: C VOC function: Capsid serine proteinase [VBRC|VP0031453] CHIKV-37997-sPP location: (7569..11315) VOC[886]: sPP VOC function: Structural polyprotein GenBank gene acc: AAU43881 GenBank locus name: str_polyprotein [VBRC|VP0031452] CHIKV-37997-RdRp location: (5646..7496) VOC[884]: RdRp VOC function: RNA-dependent RNA polymerase [VBRC|VP0031451] CHIKV-37997-NS3 location: (4074..5645) VOC[883]: NS3 VOC function: Phosphoesterase [VBRC|VP0031450] CHIKV-37997-NS2 location: (1683..4073) VOC[882]: NS2 VOC function: RNA helicase/protease [VBRC|VP0031449] CHIKV-37997-NS1 location: (78..1682) VOC[880]: NS1 VOC function: Methyl/guanyltransferase [VBRC|VP0031448] CHIKV-37997-nsPP location: (78..7502) VOC[881]: nsPP VOC function: Nonstructural polyprotein GenBank gene acc: AAU43880 GenBank locus name: ns_polyprotein
GENE VBRC accession: VP0031453 name: CHIKV-37997-sPP
  (3 older abbreviations)
Protein Family (VOC) VOC ID: VBRC|VC886 name: Structural Polyprotein
  abbr: sPP function: Structural polyprotein
  alternate abbr: str_polyprotein
GenBank locus: str_polyprotein accession: AAU43881
Molecule type: polyprotein length: 3747 bp, 1248 aa
  molecular weight: 138,072 pI: 8.96
Annotation added: 6/7/2005 source: genbank
Annotations copied unmodified from GenBank record
Location (7569..11315) in: Chikungunya virus strain 37997 (GenBank: AY726732)
VBRC Taxonomy Togaviridae>Alphavirus>Chikungunya virus
Protein Analysis   Blast Analysis   Sequence   Immune Epitopes   Curation   Notes  
Analysis Results VBRC Hits Evidence
Amino Acids Composition   IEA
Transmembrane Domains Number of domains: 5
(Select for Transmembrane Record) 		  IEA
Prosite Motifs No Hits   IEA
Coiled-coil Segments None IEA
Secretory Signal Peptides Got One!   IEA
InterPro Hits
1.Peptidase S3, togavirin
2.Alphavirus E2 glycoprotein
3.Alphavirus E3 spike glycoprotein
4.Alphavirus E1 glycoprotein
5.Peptidase, trypsin-like serine and cysteine
6.Viral glycoprotein E, central and dimerisation
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 IEA
Gene Ontology ID
1.GO:0004252 : serine-type endopeptidase activity
2.GO:0005198 : structural molecule activity
3.GO:0006508 : proteolysis
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 IEA
PDB Hits
1.D mol:protein length:149 NUCLEOCAPSID PROTEIN
2.C mol:protein length:149 SEMLIKI FOREST VIRUS CAPSID PROTEIN
3.B mol:protein length:149 SEMLIKI FOREST VIRUS CAPSID PROTEIN
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 IEA
Protein-Protein Interaction No Hits   IEA
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